PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003428.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Protein Properties

Length: 743aa MW: 82932.5 Da PI: 6.5145

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003428.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.3	6.7e-14	458	539	2	89
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k +++s+v+ +l lpk f++++ +k ++ +tl de+ + ev + +k++ l++GW++F+ ++gL +gD +vF++++ ++ PCP003428.1 458 VKPMLQSHVTGGFWLGLPKYFCSKNL-PK-RDDIVTLIDEDEDECEVIYLAEKRG----LSGGWRGFAIDHGLVDGDALVFQRIRPKT 539 68999***************9994.43.4558***********545554....9********************876444 PP
2	B3	37.8	3.5e-12	656	730	16	98
EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l l +f+++h + ++ +tl de+g ++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f +v ++r PCP003428.1 656 LGLQVSFCKNHlpK----GDEVMTLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF--KVYIIR 730 678899888442....4458***********656665....**********************997777..888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MWGFGGRCYW GRKERRSDGV EGIVVLFAWM SSQERQLKSF VELYSSLGWN SLVCHSQFLN 60 MFFPEKATTI ATDILNELVE ELKIKPCPVV FASFSGGPKA CMLKVLQIIE GTCEEKLNLD 120 DCRLVKDCIS GHIFDSCPVD FTSDLGAKFV LHPSVLKISK PPRFASWMAQ SIASGLDALF 180 LNRFESQRAE YWQTLYSTIG MQAPYLILCS ENDDLAPYQV IYNFSQRLRE LGADVKLVKW 240 NGSPHVGHYK HYPVDYKAAI TELLGKATRV YSLRIRRLEG ETIGMQATQD EIVDNEPMNS 300 LRKAAGGSNG FRGVTLASSD HFFTPGSMEY EGGRDVGSMQ DERKEGIIHL PNPPTPSMNA 360 HGVLGQILFD VCVPKTVEDW DIKSSSDEAG EGPHGGEAVG GGEEKVVVDR EMRPRRYSTN 420 RHRDLSNRVY ASDEARDDAT ARAEALESGL GSSYPTMVKP MLQSHVTGGF WLGLPKYFCS 480 KNLPKRDDIV TLIDEDEDEC EVIYLAEKRG LSGGWRGFAI DHGLVDGDAL VFQRIRPKTL 540 KMKRAGKPRT YEVQMVEVRR STRVTNRPAP DYKEVVAERV MIPRRSYATN RHRDVANRVY 600 ASDETRAAAM VKADELEASL GSDHPTLVKT MLQSHVTGGF WLVNIILILS LYAVCLGLQV 660 SFCKNHLPKG DEVMTLIDED GDEYPTIYLA RKTGLSGGWK GFAVAHDLVD GDALVFQLIR 720 PTTFKVYIIR VERPGQASSE GST

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MWGFGGRCYW GRKERRSDGV EGIVVLFAWM SSQERQLKSF VELYSSLGWN SLVCHSQFLN  60
MFFPEKATTI ATDILNELVE ELKIKPCPVV FASFSGGPKA CMLKVLQIIE GTCEEKLNLD  120
DCRLVKDCIS GHIFDSCPVD FTSDLGAKFV LHPSVLKISK PPRFASWMAQ SIASGLDALF  180
LNRFESQRAE YWQTLYSTIG MQAPYLILCS ENDDLAPYQV IYNFSQRLRE LGADVKLVKW  240
NGSPHVGHYK HYPVDYKAAI TELLGKATRV YSLRIRRLEG ETIGMQATQD EIVDNEPMNS  300
LRKAAGGSNG FRGVTLASSD HFFTPGSMEY EGGRDVGSMQ DERKEGIIHL PNPPTPSMNA  360
HGVLGQILFD VCVPKTVEDW DIKSSSDEAG EGPHGGEAVG GGEEKVVVDR EMRPRRYSTN  420
RHRDLSNRVY ASDEARDDAT ARAEALESGL GSSYPTMVKP MLQSHVTGGF WLGLPKYFCS  480
KNLPKRDDIV TLIDEDEDEC EVIYLAEKRG LSGGWRGFAI DHGLVDGDAL VFQRIRPKTL  540
KMKRAGKPRT YEVQMVEVRR STRVTNRPAP DYKEVVAERV MIPRRSYATN RHRDVANRVY  600
ASDETRAAAM VKADELEASL GSDHPTLVKT MLQSHVTGGF WLVNIILILS LYAVCLGLQV  660
SFCKNHLPKG DEVMTLIDED GDEYPTIYLA RKTGLSGGWK GFAVAHDLVD GDALVFQLIR  720
PTTFKVYIIR VERPGQASSE GST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-52	B3 family protein