PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003400.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 751aa    MW: 83890.3 Da    PI: 6.6212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003400.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.26e-1173787491374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+a +++d++ a++lL ++++++sp gd +qRla++f+++L+arla+++s++yk l +++ts    ++ l+a++l+  +sP+ k+s+++ 
  PCP003400.1 378 LRTLLISCAQAAAADDHRTANELLRKVRQHSSPFGDGTQRLAHCFANGLEARLAGTGSQIYKGLVSKRTS---AADFLKAYHLYLAASPFKKMSNFVS 472
                  6789************************************************************999999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N +I + +e+++r+H+iDf+i +G+QWp+L+q ++ R++gpp++RiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+++leeL
  PCP003400.1 473 NVTIRNLAEKSTRLHVIDFGILYGFQWPTLIQRISWREGGPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAENFKVPFEYNA-IAKKWETITLEEL 569
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+l+Vnl ++ ++lldesvs++s r++vL l+++++P+v+++   +  +n++ F++rf eal ++salfd+le+ +pre++er+ +E+e+lgr
  PCP003400.1 570 KIDKDEVLVVNLLYRGKNLLDESVSVDSVRNRVLALIRRINPDVFIHGIVNGAYNAPFFVTRFREALFHFSALFDMLETVVPREDQERMLIEKEILGR 667
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e++nv+aceg er+er et+++W+ r  +aGF+++p++ + +k a   ++  + + + ++e+s++l++gWk+r+++++SaW+
  PCP003400.1 668 EAMNVIACEGWERVERPETYKQWQVRNLRAGFEQIPFDRELVKRAAKKVSSLYHKDFVIDENSQWLLQGWKGRTVFALSAWK 749
                  **********************************************9999999888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MTMDPRLRAF SDSFNGVQLG NQPLPILSQP TVVAGSRFDG KTCLDNNYRN FDYPQPGLTP  60
NSVSSYSSVS PEDDSAEDCD FSDVVLKYIN QMLMEEDMEE KTCMLQESLE LQAAEKSFYE  120
VLGKKYPPSP DLYRGYAGQY GESPGESSSG TWSNYITSTC NSGGYFGDNS SIQSPDGYSS  180
QLQGLPDYSI SQSFNGSSTR VSSLDGLVDA PSSSIYTPDL KTESQSVWQF RKGVEEASRF  240
LPSETSLVVD LEANGTSVHA PNVGTGAPFV KEERKDGGEY SSGRSRGKKN LYRDDEDVEE  300
KRSSKQAAVS SESPLRSEMF DVVLLCSTGE GRERLGSLRE ALQNGMSKSV PQNGQSTGSK  360
GGKGRGKKLS VKKEVVDLRT LLISCAQAAA ADDHRTANEL LRKVRQHSSP FGDGTQRLAH  420
CFANGLEARL AGTGSQIYKG LVSKRTSAAD FLKAYHLYLA ASPFKKMSNF VSNVTIRNLA  480
EKSTRLHVID FGILYGFQWP TLIQRISWRE GGPPKVRITG IEFPQPGFRP AERVEETGRR  540
LAAYAENFKV PFEYNAIAKK WETITLEELK IDKDEVLVVN LLYRGKNLLD ESVSVDSVRN  600
RVLALIRRIN PDVFIHGIVN GAYNAPFFVT RFREALFHFS ALFDMLETVV PREDQERMLI  660
EKEILGREAM NVIACEGWER VERPETYKQW QVRNLRAGFE QIPFDRELVK RAAKKVSSLY  720
HKDFVIDENS QWLLQGWKGR TVFALSAWKP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein