PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003352.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 381aa MW: 41900.9 Da PI: 6.9422

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003352.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl PCP003352.1 14 KGPWTPEEDQKLLTCIEEHGHGSWRALPAKAGLQRCGKSCRLRWSNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E + +++++++ G++ W+tIa++++ +Rt++++k++w+++l PCP003352.1 67 RGNFSLQEAQTIIQLHALVGNR-WSTIASHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLTCIE EHGHGSWRAL PAKAGLQRCG KSCRLRWSNY 60 LRPDIKRGNF SLQEAQTIIQ LHALVGNRWS TIASHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPMTHKLKH HEGHAKDAAN ISHMAQWEGA RLEAEARLGK ESKLVITNAN PFQHHLMISS 180 SPNPAHQVVH VRNAPPALPC LDVLKAWQEG CSLTTNSTIR NNVNSTMFSG GSMTDVDDLE 240 SPTSKLNLRH VNNAFNPPPM LNINNGFPCE SGVLQNNDNV TSGCTDASAA WFADGFRSGN 300 VDEEKNVVVP AELSSMVMEG FSDVLVYDSE DHQQNASLGG EISGNGGDDG SCGDRGFEEN 360 RNYWNSILNL VNASASGSPV F

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLTCIE EHGHGSWRAL PAKAGLQRCG KSCRLRWSNY  60
LRPDIKRGNF SLQEAQTIIQ LHALVGNRWS TIASHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPMTHKLKH HEGHAKDAAN ISHMAQWEGA RLEAEARLGK ESKLVITNAN PFQHHLMISS  180
SPNPAHQVVH VRNAPPALPC LDVLKAWQEG CSLTTNSTIR NNVNSTMFSG GSMTDVDDLE  240
SPTSKLNLRH VNNAFNPPPM LNINNGFPCE SGVLQNNDNV TSGCTDASAA WFADGFRSGN  300
VDEEKNVVVP AELSSMVMEG FSDVLVYDSE DHQQNASLGG EISGNGGDDG SCGDRGFEEN  360
RNYWNSILNL VNASASGSPV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-100	MYB family protein