PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP003345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 351aa MW: 39569.9 Da PI: 7.527 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.7 | 2.3e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk PCP003345.1 9 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGK 53 689****************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIILLMFSP TGKPSLCCGK 60 RSSIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ 120 SSLLQTQLSE IKKRLSCWTS PDKINSVEQL GHMEDSLRES LNQIRIHKEN LQKQQLMSIK 180 CTSQFQNGLH IPFSMNAEQQ LQPLSWIPTN ESRHIVLPED TTLLPHRDLE CSASSSFGSY 240 SGYLGTGKSP EISTSGQENG ILNDLTRTAP LNLQLGGHIP YLPYNLNMLT DTKFQPPAEM 300 SPQENPVEYQ VNGSFEAPRP EFYPTQHNWA STSGPCAVTM FDEHLYSQQT N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 6e-93 | M-type_MADS family protein |