PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003344.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 365aa MW: 40345.8 Da PI: 9.034

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003344.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	39	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ PCP003344.1 39 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 84 899***************************.*********996 PP
2	Myb_DNA-binding	57.3	3.7e-18	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ PCP003344.1 91 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 134 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MSGLKKGWLG SDHDKNPNES GVKVSEKETE SGQSKLCARG HWRPAEDSKL KELVALYGPQ 60 NWNLIAEKLE GRSGKSCRLR WFNQLDPRIN RRAFTEEEEE RLMQAHRIYG NKWAMIARLF 120 PGRTDNAVKN HWHVIMARKY REQSSAYRRR KLNQTVYRSM EENPSFNAAS RSTEPPPPYG 180 GLSLPNGGLG GSGSISSFSY GTSYDGVVGY GADYYGSNGS QNLISVEEEA ITRKKLLSHN 240 NSGFCSQQET PFEFFRGPKS NEVMGMMSQN RCWDGSGEME GHSYGGMYTH HPPPNMNVTT 300 MQQSNFHSLV HQKYSDSSCQ VSGGKPSTSA SAADRVVGGG GGGSSHRETS IPPPPFIDFL 360 GVGAT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MSGLKKGWLG SDHDKNPNES GVKVSEKETE SGQSKLCARG HWRPAEDSKL KELVALYGPQ  60
NWNLIAEKLE GRSGKSCRLR WFNQLDPRIN RRAFTEEEEE RLMQAHRIYG NKWAMIARLF  120
PGRTDNAVKN HWHVIMARKY REQSSAYRRR KLNQTVYRSM EENPSFNAAS RSTEPPPPYG  180
GLSLPNGGLG GSGSISSFSY GTSYDGVVGY GADYYGSNGS QNLISVEEEA ITRKKLLSHN  240
NSGFCSQQET PFEFFRGPKS NEVMGMMSQN RCWDGSGEME GHSYGGMYTH HPPPNMNVTT  300
MQQSNFHSLV HQKYSDSSCQ VSGGKPSTSA SAADRVVGGG GGGSSHRETS IPPPPFIDFL  360
GVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-78	MYB family protein