PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002726.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 380aa MW: 41857.1 Da PI: 7.3738

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002726.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99	8.9e-31	56	192	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.............sec....eaesssssa 82 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ ++ +++ s + ++++ + s+ PCP002726.1 56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLPMPPPgsfglnhpslgltS-ShgdqTNAHAQLSH 152 689*************************************************************6666633333222222211.11111111222222 PP TCP 83 snsssg.....................kaaksaa.kskksqk 102 ++s g +a++++ ++++ PCP002726.1 153 NHS--GegpssgidrsnfwptgsdalwRAKSKEIvRDTRNED 192 222..1234444555555555555555222222223333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MIKIPISEAD LQEAGAGSSS REDQANKISS NPNLSRPSTP WLRLKDPRIV RVSRAFGGKD 60 RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ ERLGLNQPSK VVDWLLDAAK HEIDELPPLP 120 MPPPGSFGLN HPSLGLTSSH GDQTNAHAQL SHNHSGEGPS SGIDRSNFWP TGSDALWRAK 180 SKEIVRDTRN EDEGNQKDNL GISDDQEQAG NNVDGNSSNT FLRSNTNPPF FPGLLNNSTN 240 MPYAYHNWDH SHQTSNFPLS QLGSHGFQSQ TTDLHNFPNV LSLPSTLSLS TTRSYFPSHN 300 MAATGEMDPR QFNHLQMLNS TSSTRTSQNL LPNFLSTPAL DPSSQTLRAP HLSMVTKLVH 360 SSDNTGSGHH PNNNQEPPSR

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MIKIPISEAD LQEAGAGSSS REDQANKISS NPNLSRPSTP WLRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ ERLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPPPGSFGLN HPSLGLTSSH GDQTNAHAQL SHNHSGEGPS SGIDRSNFWP TGSDALWRAK  180
SKEIVRDTRN EDEGNQKDNL GISDDQEQAG NNVDGNSSNT FLRSNTNPPF FPGLLNNSTN  240
MPYAYHNWDH SHQTSNFPLS QLGSHGFQSQ TTDLHNFPNV LSLPSTLSLS TTRSYFPSHN  300
MAATGEMDPR QFNHLQMLNS TSSTRTSQNL LPNFLSTPAL DPSSQTLRAP HLSMVTKLVH  360
SSDNTGSGHH PNNNQEPPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	2e-43	TCP family protein