PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002715.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 519aa MW: 54503 Da PI: 8.4871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002715.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP002715.1 61 FVCEICSKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.2	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PCP002715.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MPTDLDNSST ASGEASVSSS GNQTAPPKPA TKKKRNLPGM PDPDAEVIAL SPKTLMATNR 60 FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEASCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESAKAHTPTA AAAATAVNLN SESDPKTQSA NSPPQAPPPP QAAAPSQPTT 240 SSVPSMSAGV LSSSLPTQST VRELPENPTQ VVEEVQVVVG RKGNCSSSSS SSSSNGSTSN 300 GVFASLFTSS TTSASLQPPQ QPAFTDLIRA MGHPDQSNDL APSSSMEPIS LGLSTSHGSS 360 IFESAGHERR QYAPPPQPAM SATALLQKAA QMGPAETNAS LLRGFGIMSS ASSSVQQETM 420 QWNQRPAEPD NTPVAAGLGL GLPCDGGSGW KELMMESPSM FGPKQTTLDL LGLGMAAGNN 480 PSSGLSALIT SIGGGLDVAA AAASYGGGEY SGKDLARSS

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MPTDLDNSST ASGEASVSSS GNQTAPPKPA TKKKRNLPGM PDPDAEVIAL SPKTLMATNR  60
FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEASCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESAKAHTPTA AAAATAVNLN SESDPKTQSA NSPPQAPPPP QAAAPSQPTT  240
SSVPSMSAGV LSSSLPTQST VRELPENPTQ VVEEVQVVVG RKGNCSSSSS SSSSNGSTSN  300
GVFASLFTSS TTSASLQPPQ QPAFTDLIRA MGHPDQSNDL APSSSMEPIS LGLSTSHGSS  360
IFESAGHERR QYAPPPQPAM SATALLQKAA QMGPAETNAS LLRGFGIMSS ASSSVQQETM  420
QWNQRPAEPD NTPVAAGLGL GLPCDGGSGW KELMMESPSM FGPKQTTLDL LGLGMAAGNN  480
PSSGLSALIT SIGGGLDVAA AAASYGGGEY SGKDLARSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-106	C2H2 family protein