PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002652.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 360aa MW: 41385 Da PI: 6.6445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002652.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++++G g+W+t ++ g+ R++k+c++rw +yl PCP002652.1 14 KGPWTPEEDQKLMDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.7	4.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PCP002652.1 67 RGRFSFEEEETIIQLHIILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLMDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHIILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDFSSILY NSSHHHHQMN NFSRLLGQPI GLNPELLRLA TLIQSHRESN 180 SNQNFVLQNA QENDYHQICN PQIQVSSQVQ SNQLQQPIQH NVPYPNEAAQ IMQLQPNVEY 240 PSSLSDFRSQ ISQLNEWQSN AGTSNFTEEY VDLPSFPYFG SEQNQTVLDL SPETSNIHSN 300 NSNQNFSFTS VFSTPSSSPT PMNSNSTTYF NSGTEDERES YCSNILKFDI PSILDVNEFM

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQKLMDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHIILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDFSSILY NSSHHHHQMN NFSRLLGQPI GLNPELLRLA TLIQSHRESN  180
SNQNFVLQNA QENDYHQICN PQIQVSSQVQ SNQLQQPIQH NVPYPNEAAQ IMQLQPNVEY  240
PSSLSDFRSQ ISQLNEWQSN AGTSNFTEEY VDLPSFPYFG SEQNQTVLDL SPETSNIHSN  300
NSNQNFSFTS VFSTPSSSPT PMNSNSTTYF NSGTEDERES YCSNILKFDI PSILDVNEFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-104	MYB family protein