PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002533.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 406aa MW: 44386.3 Da PI: 9.2523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002533.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	120	165	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W+ Ia+++ gR++k+c++rw++ PCP002533.1 120 RGHWRPAEDSKLKELVGQYGPQNWNIIAEKLD-GRSGKSCRLRWFNQ 165 899***************************.*********996 PP
2	Myb_DNA-binding	52	1.6e-16	173	215	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++E+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ PCP002533.1 173 RAFSEDEEERLLVAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215 689****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MGFQHLRSDC DGFTRYKDLN FLPPPPVSNQ LSLSNTFGGS STSAMGLGPF SPSSSQQTNK 60 PWSFQALENG GPKNISDHGV LFGVDLKRPV PLNLNLVGEE DDDEDRSPAG GRTSAKSCAR 120 GHWRPAEDSK LKELVGQYGP QNWNIIAEKL DGRSGKSCRL RWFNQLDPRI NKRAFSEDEE 180 ERLLVAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARR HREQSNVFKR RKPSSPPPPS 240 PPAPPPHMVA NFPKNPSTST ESTISISTIN DDSTQSASTC TDLSLTPSNK PPPTFFTKFH 300 HFHHHQNFGS HIGSSSSDGG FKKMIGSNGN GFCRSTGPAR GVGAPAAAMK GVDTSGHQSD 360 SNSDISGDDS VTTTRTNLSL SGENQNLHHE KITTIHFIDF LGVGTP

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MGFQHLRSDC DGFTRYKDLN FLPPPPVSNQ LSLSNTFGGS STSAMGLGPF SPSSSQQTNK  60
PWSFQALENG GPKNISDHGV LFGVDLKRPV PLNLNLVGEE DDDEDRSPAG GRTSAKSCAR  120
GHWRPAEDSK LKELVGQYGP QNWNIIAEKL DGRSGKSCRL RWFNQLDPRI NKRAFSEDEE  180
ERLLVAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARR HREQSNVFKR RKPSSPPPPS  240
PPAPPPHMVA NFPKNPSTST ESTISISTIN DDSTQSASTC TDLSLTPSNK PPPTFFTKFH  300
HFHHHQNFGS HIGSSSSDGG FKKMIGSNGN GFCRSTGPAR GVGAPAAAMK GVDTSGHQSD  360
SNSDISGDDS VTTTRTNLSL SGENQNLHHE KITTIHFIDF LGVGTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	5e-71	MYB family protein