PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002486.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 327aa MW: 36246.1 Da PI: 8.1908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002486.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H PCP002486.1 59 YSCSFCRREFRSAQALGGHMNVH 81 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEQARYWMWA KRKHNSLSSS NHDHHVQVPT SNDDSWEEQA FAEDAAGPLG GCIWPPRSYS 60 CSFCRREFRS AQALGGHMNV HRRDRARLKQ SPNDETALQN NLHHHQDHDH SVQNSANNPI 120 SSSLGSFQFP SRQVCALVYN PKNPSSDPGI IATSSPSSVS KLSAQLPCKK NCAEQTLIPP 180 SSSSSASSPQ SWSVLGTNRY HNNKSVARDH IEGEKISRVV EYSGSCRAKG DHQVANNDHN 240 LSVSLNLVVR CARTSVSSDG DEAIVSCKRR RTDEIPSSIP FFLKSGSVDR VHHLQPAEGF 300 EFSSSSIEEL DLELRLGDRP KVIKVNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	1e-26	C2H2 family protein