PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP002450.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 798aa    MW: 90242.2 Da    PI: 6.731
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP002450.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.61.9e-2791178291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  PCP002450.1  91 FYNAYATHVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKITSGKWVVTKFVKEHTHPLTP 178
                  9*****************************************9988..9**************************************986 PP
2FAR180.43.3e-25297385290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k    r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+
  PCP002450.1 297 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 385
                  9**************************************99999998****************************************96 PP
3FAR152.22.1e-16641723290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY++YA++vGF +r+ +s+ks+r+g+i++r + C    +++++        +++  ++  C a++ +k+e  g+w+++k+  +HnH l+
  PCP002450.1 641 FYDDYARRVGFVTRVLSSRKSERDGSIISRGLGCRGISENRRKV------MQKEFGEQEACPAMVLLKQEMPGRWVIKKFLGDHNHLLV 723
                  9*********************************7655555544......458899999***************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    
MSFVEFALDG DVDGEVVGSS AEMELSRAAD ENETGGSSVE GAFQLGLDDK INVDSPGGDI  60
IPEAVPVVSV VSADEPYVGQ EFETEAAAHA FYNAYATHVG FIIRVSKLSR SRRDGSAIGR  120
ALVCNKEGYR MPDKREKIVR QRAETRVGCR AMILVRKITS GKWVVTKFVK EHTHPLTPGK  180
GRRDCIYDQY PILECVDVFE SKAHRCPFPQ LGLLVFALAS CVVSYAFHAI CVYVYIAVPN  240
DDADAHVRFR QCIAVDSDGD IALESSDAQE LIAYDDDSIV EPYEGMEFES EDAAKIFYDE  300
YARHVGFVMR VMSCRRSERD GRILARRLGC NKEGHCVSIR GKFGPVRKPR ASTREGCKAM  360
IHVKYDKSSK WVITKFIKDH NHPLVVSPRE ARQTLDEKDK KIQELTAELR NKKRLCTTYQ  420
EQLTAFTEIV EEYNEQLSKK VQNVARTVGH HFCSEIKFPN FFNDDNQWLA CEAALVVPYV  480
AQAAAMWQIQ FIRDYADMQA LMELLYVVMM SEKVKNSEVP FLLLFQNLSS PSLLSDHHLH  540
RTPNPNRNPV GVQYPPLMIL IPSDLLTLFC AQFYLLSSFK FLFVCRHTAF PVFVIVEVQM  600
DDLNGTVETS AEGESNNIEV GPCQEPYEGM LFESEEAAKV FYDDYARRVG FVTRVLSSRK  660
SERDGSIISR GLGCRGISEN RRKVMQKEFG EQEACPAMVL LKQEMPGRWV IKKFLGDHNH  720
LLVIQSPKIR KTLDEKDKKI QELSAELRVK KRLSAAYRDQ LLAFIKDIED HNAHLSTKVQ  780
SVSNKIKELE AKTGALTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-95FAR1 family protein