PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002256.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Protein Properties

Length: 1287aa MW: 143063 Da PI: 7.8246

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002256.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.2e-19	349	449	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++lv+ PCP002256.1 349 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIRIQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGRLVI 444 99************************555556677***********99899999999.*******************987.8999999 PP EEE-S CS B3 95 kvfrk 99 +++++ PCP002256.1 445 GFRKA 449 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1287 aa Download sequence
MESKICMNPS CRMANTHEWK KAVQLLIRCW EDIVEIWVVV LDVGFDVYCG LGLVALVEYE 60 NSVYCNTFHS GETGWRDCNL CHKPLHCGCI VSEILYECLD FGGIGCIGCA SQPRMVPNSI 120 FRYPLSIQDG DVLNGFGGLK ISDSGDQQST VPQNGALSDT ANEGKLLQLC QVMEANESNL 180 SSQSQRGEII VSPVQTKREE VTYPRGEVGP GFSSISRPSF GSLTFAKPDN GRIMIEVKDM 240 NKPSSDPSLS MTLGGPSATP NFAQPFTGGI LERRDQIKTP SSFQQGQKIQ PIFPRPLRPP 300 PPVHHVRVAR PPAEGRGKSQ LLPRYWPRIT DQELQKLAGD LNSTIVPLFE KVLSASDAGR 360 IGRLVLPKAC AEAYFPPISQ SEGLPIRIQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI 420 QSMQLQAGDT VTFSRIDPGG RLVIGFRKAS RCLDVQESQT SFLPNGTPGE TSCPSVVENL 480 VTGSGHSSIY QTSTGSKDPY LNALSGHLHL ADGDTSLHDN ENHSHFTSED LQQKPVSNSD 540 KKRARNIGPK SKRLLLHSED VLELRLTWEE AQDLLRPPPS VKPSIVTIED HEFEEYDEPP 600 VFGKRSLFIA ESERQEQWAQ CDDCSKWRRL PVDVLLPPKW TCSENSWDIN RCSCSAPEEV 660 SQKELDNLLR PSKDLKKRRI VVNHNEAQEH EPSGLDALAS ASAAILGDSV DYADEQSVGA 720 TTRHPRHRPG CTCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMNKR KRKSEREMEN 780 AHRDNNDHKD ESEMNGTSTE IELHMNHLSE NGSSCEKRIQ ADVAESSCAG QIDLNCEPKH 840 NYVQVSGLNL LRLADAVAQQ PVKNSTKESG LANRMYEPQA GLGSSLRTQD TAETDKLLCN 900 EGSLSSVAAA WDLEGRDLND LLGTYVKEKN EADKKIRART LQSSNYTKLH QKEKKPTPLL 960 LNPTSQLKST TQASSPSPLT KLPSLDFNRA LQASRDNHHR NRHHNNEDNV PVGPYDIGSN 1020 NDYNHRHIDH HMNSHHGHQR EVNHDMQHGH GGHGQYMGGG DHHHNHQMHR GMHHGHDGHA 1080 VNNGHHMSLN SPGPTCNSGM KHGLETSMGA FDHDVSGVSG VSMASMYQKE RGGIRRPGIP 1140 HSNICTLCST YIYIFRHRCL VCGRVYCRQC VILGMGEMTE GRKCVECLGR RFSQRYIQRA 1200 GKFGCWSRYP SRVKQAELKW AEKGPRRSAG NGGYGQSSMT SPISKSPVTP MTPRTPNRGH 1260 ASSPNSFVMN SSSYSPYSPS HRHHLPL

Sequence ? help Back to Top

Protein Sequence Length: 1287 aa Download sequence

MESKICMNPS CRMANTHEWK KAVQLLIRCW EDIVEIWVVV LDVGFDVYCG LGLVALVEYE  60
NSVYCNTFHS GETGWRDCNL CHKPLHCGCI VSEILYECLD FGGIGCIGCA SQPRMVPNSI  120
FRYPLSIQDG DVLNGFGGLK ISDSGDQQST VPQNGALSDT ANEGKLLQLC QVMEANESNL  180
SSQSQRGEII VSPVQTKREE VTYPRGEVGP GFSSISRPSF GSLTFAKPDN GRIMIEVKDM  240
NKPSSDPSLS MTLGGPSATP NFAQPFTGGI LERRDQIKTP SSFQQGQKIQ PIFPRPLRPP  300
PPVHHVRVAR PPAEGRGKSQ LLPRYWPRIT DQELQKLAGD LNSTIVPLFE KVLSASDAGR  360
IGRLVLPKAC AEAYFPPISQ SEGLPIRIQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI  420
QSMQLQAGDT VTFSRIDPGG RLVIGFRKAS RCLDVQESQT SFLPNGTPGE TSCPSVVENL  480
VTGSGHSSIY QTSTGSKDPY LNALSGHLHL ADGDTSLHDN ENHSHFTSED LQQKPVSNSD  540
KKRARNIGPK SKRLLLHSED VLELRLTWEE AQDLLRPPPS VKPSIVTIED HEFEEYDEPP  600
VFGKRSLFIA ESERQEQWAQ CDDCSKWRRL PVDVLLPPKW TCSENSWDIN RCSCSAPEEV  660
SQKELDNLLR PSKDLKKRRI VVNHNEAQEH EPSGLDALAS ASAAILGDSV DYADEQSVGA  720
TTRHPRHRPG CTCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMNKR KRKSEREMEN  780
AHRDNNDHKD ESEMNGTSTE IELHMNHLSE NGSSCEKRIQ ADVAESSCAG QIDLNCEPKH  840
NYVQVSGLNL LRLADAVAQQ PVKNSTKESG LANRMYEPQA GLGSSLRTQD TAETDKLLCN  900
EGSLSSVAAA WDLEGRDLND LLGTYVKEKN EADKKIRART LQSSNYTKLH QKEKKPTPLL  960
LNPTSQLKST TQASSPSPLT KLPSLDFNRA LQASRDNHHR NRHHNNEDNV PVGPYDIGSN  1020
NDYNHRHIDH HMNSHHGHQR EVNHDMQHGH GGHGQYMGGG DHHHNHQMHR GMHHGHDGHA  1080
VNNGHHMSLN SPGPTCNSGM KHGLETSMGA FDHDVSGVSG VSMASMYQKE RGGIRRPGIP  1140
HSNICTLCST YIYIFRHRCL VCGRVYCRQC VILGMGEMTE GRKCVECLGR RFSQRYIQRA  1200
GKFGCWSRYP SRVKQAELKW AEKGPRRSAG NGGYGQSSMT SPISKSPVTP MTPRTPNRGH  1260
ASSPNSFVMN SSSYSPYSPS HRHHLPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	759	773	KRRFKTLMMNKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein