PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002152.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 394aa MW: 44246 Da PI: 6.3194

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002152.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45	2.6e-14	14	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W++++++ g + R++k+c++rw +yl PCP002152.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKHAGnspthfnfalrssgLQRCGKSCRLRWINYL 75 678*********************************************************97 PP
2	Myb_DNA-binding	45.5	1.7e-14	81	124	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ PCP002152.1 81 RGMFSQQEEDLILSLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 124 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKHAGNSPTH FNFALRSSGL 60 QRCGKSCRLR WINYLRPDLK RGMFSQQEED LILSLHEVLG NRWAQIAAQL PGRTDNEIKN 120 FWNSCLKKKL MKQGIDPTTH KPLTEEELKE KKNIDCSALK ESLPMPELPA MPITMASQGP 180 TFLLNDSNYY DGNGGVLNNP QASRAFDSLS YFEYQSGFES QSGFESSSAY NSDLVATQYH 240 HTNIRPYESS SNFGFTSMPS LANSDHGSMS GTDFSENSAS RLSSFFMNEV KESSSNSSNV 300 SSYAAGYHMT SNNGNNAIEN AAFSWETDNK LDSLFQFHVN GIKSEEMIKP TSSWQQQGQL 360 VHHHAQNSVD FSSYPLTSLS EDLTGENFDV FQNI

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKHAGNSPTH FNFALRSSGL  60
QRCGKSCRLR WINYLRPDLK RGMFSQQEED LILSLHEVLG NRWAQIAAQL PGRTDNEIKN  120
FWNSCLKKKL MKQGIDPTTH KPLTEEELKE KKNIDCSALK ESLPMPELPA MPITMASQGP  180
TFLLNDSNYY DGNGGVLNNP QASRAFDSLS YFEYQSGFES QSGFESSSAY NSDLVATQYH  240
HTNIRPYESS SNFGFTSMPS LANSDHGSMS GTDFSENSAS RLSSFFMNEV KESSSNSSNV  300
SSYAAGYHMT SNNGNNAIEN AAFSWETDNK LDSLFQFHVN GIKSEEMIKP TSSWQQQGQL  360
VHHHAQNSVD FSSYPLTSLS EDLTGENFDV FQNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.2	2e-72	MYB family protein