PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP002052.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 282aa    MW: 30826.6 Da    PI: 7.9108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP002052.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023109131123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  PCP002052.1 109 FSCNYCQRKFYSSQALGGHQNAH 131
                  89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEPAKNYETN IFSLAEAPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKE KKPSIRIIDL  60
DASDSNSNRG FCFDNPELNL LESLETGSLE GTTTTTTPLV SDAAEPRVFS CNYCQRKFYS  120
SQALGGHQNA HKRERTLAKR GQRMVGSHIM ASAAGFGYPY YSSLASLPLH GGGAFRALDI  180
QAHSKIHKPS SMMSSSAIRF GGSYGHRTFG SRSLFDQQPA VGKLAAAAAK GVGGAGRFDM  240
AKSNMVSQSS EEIGKCWLGN DSRFKSGSDQ EEMKKLDLSL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.17e-37C2H2 family protein