PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002020.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 609aa MW: 68442.6 Da PI: 7.425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.3e-27	444	532	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YA++vGF++r+ + ++s+r+g+i +r+f C+keg+r+++k+k+ + rr+r+etr gCka+++ +kek+gkw+vtkle H H++ PCP002020.1 444 EYYDAYATRVGFRIRVGNFHRSNRDGSINSRKFLCNKEGFRDNKKSKRGEVRRSREETREGCKAMIMARKEKSGKWVVTKLEIRHCHPM 532 69*************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MTRLEKLAIA HQLAKLRVDV IEAGFPASSK YDLETVKLIA KEVGSRVDEC GYVPVISAYC 60 RCVRSDVDAA WESVKDATRP RLCIFISTSK IHMKYKLNKT ADQVLELAKE SVRYARSLGA 120 QDITFVCEDA GRSEKEFLYR IYGEAIKAGA TTLTFTDTVG YNFPSEVEQF VKDLKANVIG 180 IENVILSMHC HNDFGLANAN TIAGAYAGAR QVEVTINGIG ERAGNASLEE VEEYSGLSVQ 240 PHKAIVGANI FSHASGIHQD GVLKNKSTYE IILAEDIGYV HSHDTGIVLG KHSGRHALKS 300 RLLQLGHDLD EKKFHEVFEH FKSLAETKKS LTKEDLESLV YQSPNNGKHC GNIQKLQQNG 360 WQTSASLRNT ERVTRMTADP TPMESEADLN KPVVESSVER DVPNTESGEM LDSNNGTELI 420 ENKVNGILEP YVGMEFDSEE AVKEYYDAYA TRVGFRIRVG NFHRSNRDGS INSRKFLCNK 480 EGFRDNKKSK RGEVRRSREE TREGCKAMIM ARKEKSGKWV VTKLEIRHCH PMWISRGKKV 540 TIPAPSQDEK DKKIRELSAE LYRANQQLAE CRKTLEMVLK EVQTSVSALE LVEWLDRMRP 600 CIAEAWYGH

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MTRLEKLAIA HQLAKLRVDV IEAGFPASSK YDLETVKLIA KEVGSRVDEC GYVPVISAYC  60
RCVRSDVDAA WESVKDATRP RLCIFISTSK IHMKYKLNKT ADQVLELAKE SVRYARSLGA  120
QDITFVCEDA GRSEKEFLYR IYGEAIKAGA TTLTFTDTVG YNFPSEVEQF VKDLKANVIG  180
IENVILSMHC HNDFGLANAN TIAGAYAGAR QVEVTINGIG ERAGNASLEE VEEYSGLSVQ  240
PHKAIVGANI FSHASGIHQD GVLKNKSTYE IILAEDIGYV HSHDTGIVLG KHSGRHALKS  300
RLLQLGHDLD EKKFHEVFEH FKSLAETKKS LTKEDLESLV YQSPNNGKHC GNIQKLQQNG  360
WQTSASLRNT ERVTRMTADP TPMESEADLN KPVVESSVER DVPNTESGEM LDSNNGTELI  420
ENKVNGILEP YVGMEFDSEE AVKEYYDAYA TRVGFRIRVG NFHRSNRDGS INSRKFLCNK  480
EGFRDNKKSK RGEVRRSREE TREGCKAMIM ARKEKSGKWV VTKLEIRHCH PMWISRGKKV  540
TIPAPSQDEK DKKIRELSAE LYRANQQLAE CRKTLEMVLK EVQTSVSALE LVEWLDRMRP  600
CIAEAWYGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-44	FAR1 family protein