PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001970.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 547aa MW: 61622.7 Da PI: 7.3259

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001970.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00049	7	27	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k+Fs+ + H+r+H PCP001970.1 7 CKICNKRFSNGKAMGGHMRSH 27 *******************99 PP
2	zf-C2H2	13.3	0.00025	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H PCP001970.1 184 YKCETCDKVFRSYQALGGHRASH 206 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MEKQRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP PQQQHHQLSD SPESSSPPFS 60 TSNRGMHSSL DSAVVHDGGD SDSESHPRNP THRRSKRRRK VIGKSSLTLP FEAEQVSSVT 120 DAFSTEDVAR CLIMLSMDKW DKWEKVKVKN GVDESADEEE EDESDDRGGS GFRSHTRVRT 180 RGKYKCETCD KVFRSYQALG GHRASHKKIL KTQVFDDYEE EEDEDFEEDD GQNGNLAVVE 240 NHRIFECSVC FKQFDSGQAL GGHRKVHYYN NLTINAPTRN MNLPASSTNF VDNLVIDLNL 300 PAPEEEEEEK QGVTQKSGLE DDKHPNHTCL LDKSGLEDAK HPNQKTCFAA ERLQKKVPPI 360 QEEDFHRFRI LHNRLLQWRF ANARAEAAKL ATQKLSQDKL FSVWLRTLKV RNFILDKRIQ 420 VQKLKHEIKA DVASVYETMT AAMAVMEGNL GMVSKLLPQL EKVLYMVMEL LIEQNQQRDL 480 ESNLALVSAL AKLLTWFGIG SCLLRLDLKA VKEGGNLGRI TDLGEGIGNL CHILTRGGSL 540 LGPAPPP

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MEKQRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP PQQQHHQLSD SPESSSPPFS  60
TSNRGMHSSL DSAVVHDGGD SDSESHPRNP THRRSKRRRK VIGKSSLTLP FEAEQVSSVT  120
DAFSTEDVAR CLIMLSMDKW DKWEKVKVKN GVDESADEEE EDESDDRGGS GFRSHTRVRT  180
RGKYKCETCD KVFRSYQALG GHRASHKKIL KTQVFDDYEE EEDEDFEEDD GQNGNLAVVE  240
NHRIFECSVC FKQFDSGQAL GGHRKVHYYN NLTINAPTRN MNLPASSTNF VDNLVIDLNL  300
PAPEEEEEEK QGVTQKSGLE DDKHPNHTCL LDKSGLEDAK HPNQKTCFAA ERLQKKVPPI  360
QEEDFHRFRI LHNRLLQWRF ANARAEAAKL ATQKLSQDKL FSVWLRTLKV RNFILDKRIQ  420
VQKLKHEIKA DVASVYETMT AAMAVMEGNL GMVSKLLPQL EKVLYMVMEL LIEQNQQRDL  480
ESNLALVSAL AKLLTWFGIG SCLLRLDLKA VKEGGNLGRI TDLGEGIGNL CHILTRGGSL  540
LGPAPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-33	C2H2 family protein