PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001912.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 1161aa MW: 130643 Da PI: 7.3209

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001912.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.9	2.7e-11	9	58	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e+Le+++ +++yps++++e A+ gLt +qV+ WF +R +ek+ PCP001912.1 9 TQLQVEALESFYSEEKYPSRTAMECHAAAFGLTYKQVRGWFVEKRRREKR 58 899*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MMEKIKKKTQ LQVEALESFY SEEKYPSRTA MECHAAAFGL TYKQVRGWFV EKRRREKRGN 60 RTSELGTGAT RIDKHGPSRT KAPPSSRYMK TSLLTKKERT KWNHIQELLT PDYILKKVFR 120 KDGPPLGVEF DSVPSGALCH SPDSPNFLSP CKENDRATKR RKVIKHAVIN HHDCNTNAPV 180 KKHGVGKGFM VNHQDCNKSA PVQKHGVGKG LITNHQDCNK RAPVQKHGVG KGLMTVWQAT 240 NPNARDFPIE MGLVNGEVAS VSLIRTSVLQ KPVTQNRRLQ PKKCGPMEAN NENQKFPGKE 300 KCELALEGTG SQEHSDKIAM LVDDEELEQR ELQARPNSLG CSDHFTNGDH ACLLCKDLLA 360 KFPPNSVKMK LPFDMQPWDS SPEIVKKLFK VFHFLYTYAI MVDINSFTID EFAQAFHDKD 420 SMLLGKIHVA LLKLLLTNVE AELSCGSIPH LSKSCNFLAF IHSVENHEST LEFWKRSLNP 480 LTWTEILRQV LVAAGFGSKQ GAIRRDTLSK EMSLMVKYGL RPGTLKGELF RVLLEQGIHG 540 LKVSELAKSL QISELNLSSK IEELESLICS TLSSDITLFE KISSSTYRVR INSSGKEVEE 600 SQSDTEDSGA VDDEFCDSGT CSSDDDSGWN SRNSRIRKLT YMNNGRNKDS MLTVHTEIDE 660 SHPGEVWLLG LMEGEYSDLS IEEKVNAIVA LIDLLSAGSS FRMEDPTNAV AECIPSSLHS 720 GSGGKIKRLS ANQHSDPRST WVHAGQMSHA TEDNTLNFHP IDSSTTISKF SEERSSTEGK 780 NGKEKEVQFD LHPMQSVFLG SDRRYNRYWL FLGPCNAYDP GHGRVYFESS EDGHWQVIDT 840 EEALCALLSV LDDRGKREAV LIESVEKRIS FLCQAMSSRM VTSGRIDNLA QSDQPVPDNV 900 REDTYSPVSE VDNLSGTAND SPSSSGAVVL EVRKKGEELK QKWKRIQAFD SWLWNFFYLE 960 LNAVKLGKRS YFDTLHRCES CHDLYWRDEK HCRICHTTFE LHFDMEERYA IHVATCKEKE 1020 ASDTFPEHKV LSSQIQSLKA AVHAIESGMP EDALLGAWKK SAHKLWVKRL RRTSSLSELL 1080 QVLADFVGAI NEDRLYECNI VQGSCNFAEE LIASFACMPH TSSAVALWLV KLDALISPFL 1140 ERAHSEKRKE ISIRGKHAPK Q

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MMEKIKKKTQ LQVEALESFY SEEKYPSRTA MECHAAAFGL TYKQVRGWFV EKRRREKRGN  60
RTSELGTGAT RIDKHGPSRT KAPPSSRYMK TSLLTKKERT KWNHIQELLT PDYILKKVFR  120
KDGPPLGVEF DSVPSGALCH SPDSPNFLSP CKENDRATKR RKVIKHAVIN HHDCNTNAPV  180
KKHGVGKGFM VNHQDCNKSA PVQKHGVGKG LITNHQDCNK RAPVQKHGVG KGLMTVWQAT  240
NPNARDFPIE MGLVNGEVAS VSLIRTSVLQ KPVTQNRRLQ PKKCGPMEAN NENQKFPGKE  300
KCELALEGTG SQEHSDKIAM LVDDEELEQR ELQARPNSLG CSDHFTNGDH ACLLCKDLLA  360
KFPPNSVKMK LPFDMQPWDS SPEIVKKLFK VFHFLYTYAI MVDINSFTID EFAQAFHDKD  420
SMLLGKIHVA LLKLLLTNVE AELSCGSIPH LSKSCNFLAF IHSVENHEST LEFWKRSLNP  480
LTWTEILRQV LVAAGFGSKQ GAIRRDTLSK EMSLMVKYGL RPGTLKGELF RVLLEQGIHG  540
LKVSELAKSL QISELNLSSK IEELESLICS TLSSDITLFE KISSSTYRVR INSSGKEVEE  600
SQSDTEDSGA VDDEFCDSGT CSSDDDSGWN SRNSRIRKLT YMNNGRNKDS MLTVHTEIDE  660
SHPGEVWLLG LMEGEYSDLS IEEKVNAIVA LIDLLSAGSS FRMEDPTNAV AECIPSSLHS  720
GSGGKIKRLS ANQHSDPRST WVHAGQMSHA TEDNTLNFHP IDSSTTISKF SEERSSTEGK  780
NGKEKEVQFD LHPMQSVFLG SDRRYNRYWL FLGPCNAYDP GHGRVYFESS EDGHWQVIDT  840
EEALCALLSV LDDRGKREAV LIESVEKRIS FLCQAMSSRM VTSGRIDNLA QSDQPVPDNV  900
REDTYSPVSE VDNLSGTAND SPSSSGAVVL EVRKKGEELK QKWKRIQAFD SWLWNFFYLE  960
LNAVKLGKRS YFDTLHRCES CHDLYWRDEK HCRICHTTFE LHFDMEERYA IHVATCKEKE  1020
ASDTFPEHKV LSSQIQSLKA AVHAIESGMP EDALLGAWKK SAHKLWVKRL RRTSSLSELL  1080
QVLADFVGAI NEDRLYECNI VQGSCNFAEE LIASFACMPH TSSAVALWLV KLDALISPFL  1140
ERAHSEKRKE ISIRGKHAPK Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	HB-other family protein