PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001885.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 374aa MW: 41679.2 Da PI: 7.2933

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001885.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ + +++G+g +W + ++++g++R++k+c++rw++yl PCP001885.1 14 KGPWSPEEDATLKAYMEKHGSGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.8	4.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PCP001885.1 69 GGFSEEEDNIICSLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYME KHGSGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 QRKQQQVQQS RRTASFKQEM NKRSENIANF INIPAGFDNQ NPYDLPELPV VPVANYQTHN 180 PQLIKDQASI KNMLINLGGR FSHDSDTSNT SFQYPIDILS TSSSDQQFYQ SSINLLNCTS 240 AANSNNYSQF PSTHCDASNG TGGSSSPTMF HGLNDQNNNL QFDHLHQLTE LEVYDNNFAH 300 QHQQLGGFYY QATTETLNNG STAGTSTASA ESEISWGDIN SLVYSTQMVA GYETSCPQAV 360 TVPPGLHTVF AEST

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKAYME KHGSGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
QRKQQQVQQS RRTASFKQEM NKRSENIANF INIPAGFDNQ NPYDLPELPV VPVANYQTHN  180
PQLIKDQASI KNMLINLGGR FSHDSDTSNT SFQYPIDILS TSSSDQQFYQ SSINLLNCTS  240
AANSNNYSQF PSTHCDASNG TGGSSSPTMF HGLNDQNNNL QFDHLHQLTE LEVYDNNFAH  300
QHQQLGGFYY QATTETLNNG STAGTSTASA ESEISWGDIN SLVYSTQMVA GYETSCPQAV  360
TVPPGLHTVF AEST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-75	MYB family protein