PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP001822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | RAV | ||||||||
Protein Properties | Length: 416aa MW: 45646.1 Da PI: 9.5994 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1.1e-13 | 76 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PCP001822.1 76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 124 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 96 | 2.5e-30 | 213 | 322 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ PCP001822.1 213 FEKAVTPSDVGKLNRLVIPKQYAEKHfplqsgstatvtvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQR 310 89*************************999766666655533344999*************************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + PCP001822.1 311 STGPDKQLYIDW 322 766777777765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence |
MDGISSTEES TTSDSISISP PHHIVTRVEP LAKSAPQVDS LCRVGSGASS VILDSDLSSS 60 GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ 120 RFRGRDAVTN LKPSSAEPIF SDDEENDDVE AVFLSSHSKS EIVDMLRKHT YNDELEQSKR 180 NYCAYGKRGR SNGPLGLFGM DNSRVQKARE QLFEKAVTPS DVGKLNRLVI PKQYAEKHFP 240 LQSGSTATVT VSASSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL 300 KAGDIVSFQR STGPDKQLYI DWKTRMSVNN NSNGSNPVQG QVAPVQMVRL FGVNIFKIPG 360 SVGAGPVDAA AAAAIGGGCN NNIGKRMREM ELLKLEFSKK PRIIXXXXXX XXXKLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-126 | RAV family protein |