PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP001713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29314.4 Da PI: 9.0298 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.3 | 2.6e-10 | 10 | 51 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +en++ r+ f kR++ +l K eE+ +LC++++ i++++++ PCP001713.1 10 VENDRARKDCFRKRKANLLRKMEEITTLCQVNAFAIVYGQDN 51 69*************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MGKKVKLAWV ENDRARKDCF RKRKANLLRK MEEITTLCQV NAFAIVYGQD NNDPTLWPTH 60 PEVEEQIKRF FSIPNVKRYK KSLNQETYLL ERAVKFRERI KKINKQIREM KVNKLMHQVH 120 EGKSLYEFER SDMTDLVSFC KEKMYGIKKL VAHLEKEDPN SEQGTSNYEK GKDIENTAGN 180 IAANGIENSG DALGLGLMSH SGTGKEVGQP DVSHEMVKQS EFVTGKKGKR IRLMGVAIEV 240 SSVADDDDAE DPLQHGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 4e-28 | M-type_MADS family protein |