PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001400.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 507aa MW: 57259 Da PI: 8.3268

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001400.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	86.9	1.8e-27	106	166	1	59
---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYegeHnhe PCP001400.1 106 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRCIEDDSILVATYEGEHNHE 166 58************997369****99**************************8 PP
2	WRKY	85.3	5.5e-27	334	394	1	59
---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r ed ++++ tYegeHnh+ PCP001400.1 334 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRYIEDDSILVATYEGEHNHD 394 58************997369****99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MADDRDQVVD SVQEDLQRLR KENETLRVLL QHLTTKRSTL EQQQLRQMHI QQQPCDHRYI 60 MTTNINSAIT SKRQRTDEHP DQFPAYHNKT SQFLVKSDSK DNSLIVKDGY QWRKYGQKVT 120 KDNPSSPRAY FRCSFAPRCP VKKKVQRCIE DDSILVATYE GEHNHEAIND SVPFGQFSCS 180 HKNIIVPVNF PSSGIKTNND VINISPSLPE PVTLDLSLSG SSNQENGGLG SPQSMVVDSV 240 QEDLQRLRKE NEILRFLLQH LTTKRSTHEQ QQLRQMHIQQ QPCDHRHIMT TNINSAITSK 300 RQRTDEHPDQ FPASHNKTSQ VLVKTDSKDN SLIVKDGYQW RKYGQKVTKD NPSSPRAYFR 360 CSFAPRCPVK KKVQRYIEDD SILVATYEGE HNHDAINDSV PFGQFSCSHK NVIVPVNFPS 420 SGIGTNNDVI NISPSLPEPV TLDLSLSGSS NQENGGLGSP QSMVSPGRVE DYVASLTKDP 480 NFTQTLAAAV ARSIARPANI KFIDWSG

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MADDRDQVVD SVQEDLQRLR KENETLRVLL QHLTTKRSTL EQQQLRQMHI QQQPCDHRYI  60
MTTNINSAIT SKRQRTDEHP DQFPAYHNKT SQFLVKSDSK DNSLIVKDGY QWRKYGQKVT  120
KDNPSSPRAY FRCSFAPRCP VKKKVQRCIE DDSILVATYE GEHNHEAIND SVPFGQFSCS  180
HKNIIVPVNF PSSGIKTNND VINISPSLPE PVTLDLSLSG SSNQENGGLG SPQSMVVDSV  240
QEDLQRLRKE NEILRFLLQH LTTKRSTHEQ QQLRQMHIQQ QPCDHRHIMT TNINSAITSK  300
RQRTDEHPDQ FPASHNKTSQ VLVKTDSKDN SLIVKDGYQW RKYGQKVTKD NPSSPRAYFR  360
CSFAPRCPVK KKVQRYIEDD SILVATYEGE HNHDAINDSV PFGQFSCSHK NVIVPVNFPS  420
SGIGTNNDVI NISPSLPEPV TLDLSLSGSS NQENGGLGSP QSMVSPGRVE DYVASLTKDP  480
NFTQTLAAAV ARSIARPANI KFIDWSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	7e-38	WRKY family protein