PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001370.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 637aa MW: 70823.4 Da PI: 6.5858

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001370.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	150	207	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g Hnh PCP001370.1 150 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSY-DGQITEIIYKGApHNHA 207 7**************************************.********9669997 PP
2	WRKY	106.5	1.4e-33	377	435	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+++d k+v++tYeg+Hnhe PCP001370.1 377 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHDLKFVITTYEGKHNHE 435 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MYNFALPSPT TGTFPLHPPN DNSSLLKSGT HEDDGYRPAY SSFQNPGSTV DYQALVLEQP 60 PMEFQFPMGF PEEANATNYS VDSSSDVRNL NSVIMIANGA DLQMSHSSAA SDQNSLPKES 120 IHGEDLGSHH FSEGEQKGSY PSAGMVRTSE DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC 180 QVKKKVERSY DGQITEIIYK GAPHNHAKPQ PNRRTGASLG PSFSYDEMSE MGEGSRATVK 240 VEGGPVWTNS QSCKDMKVGY DGRTDGLERT SSASVVTELS DPFSTTQGKS MSIFESAETP 300 ELSSTLASHD DEDRATQGII SLGDDADDEE SDSKRRQVIF CLSRRKKESC MIETNLASRA 360 VREPRVVVQI ESEIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSAGCPV RKHVERASHD 420 LKFVITTYEG KHNHEVPAAR NSNHMNSSSS NGLPSTANAQ PALALHRNTN VPKPETQMQD 480 LAPHFDRKTE FHDAYMRPNF LGNFNNDMKF GASSLYQMKY PPLQNTMPYA SFRHNVAHQA 540 GSIVPDFPIS LPMNLQPSGN LPLAGYDINN GKSVCPLQPY FSGQQLQEND VRFLKPKQEH 600 KDDNLYDARL PIMDQSSASL SSSSSLFYHR VMGGYPS

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MYNFALPSPT TGTFPLHPPN DNSSLLKSGT HEDDGYRPAY SSFQNPGSTV DYQALVLEQP  60
PMEFQFPMGF PEEANATNYS VDSSSDVRNL NSVIMIANGA DLQMSHSSAA SDQNSLPKES  120
IHGEDLGSHH FSEGEQKGSY PSAGMVRTSE DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC  180
QVKKKVERSY DGQITEIIYK GAPHNHAKPQ PNRRTGASLG PSFSYDEMSE MGEGSRATVK  240
VEGGPVWTNS QSCKDMKVGY DGRTDGLERT SSASVVTELS DPFSTTQGKS MSIFESAETP  300
ELSSTLASHD DEDRATQGII SLGDDADDEE SDSKRRQVIF CLSRRKKESC MIETNLASRA  360
VREPRVVVQI ESEIDILDDG YRWRKYGQKV VKGNPNPRSY YKCTSAGCPV RKHVERASHD  420
LKFVITTYEG KHNHEVPAAR NSNHMNSSSS NGLPSTANAQ PALALHRNTN VPKPETQMQD  480
LAPHFDRKTE FHDAYMRPNF LGNFNNDMKF GASSLYQMKY PPLQNTMPYA SFRHNVAHQA  540
GSIVPDFPIS LPMNLQPSGN LPLAGYDINN GKSVCPLQPY FSGQQLQEND VRFLKPKQEH  600
KDDNLYDARL PIMDQSSASL SSSSSLFYHR VMGGYPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-87	WRKY family protein