PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001299.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 326aa MW: 35257.5 Da PI: 7.8617

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001299.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PCP001299.1 124 YECKTCNRTFPSFQALGGHRASH 146 99**********99999998887 PP
2	zf-C2H2	13.1	0.00028	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PCP001299.1 212 HECSICGSEFTSGQALGGHMRRH 234 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MEGQEALVVT NEQASQMIMI KGKRTKRQRP QSPNGVVTAA VTSSSSSACG VATIGGGDHE 60 YNYYGSSFTS PTTSSEIYES TEEEEDMANC LILLAQGCHG NPKQIIEERL AQNINMGKAG 120 FLVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEIIK KLPPPAAAPP TLHSITATTF 180 EKFEDQSKQF IKYKSSPSPA IPIQIGNKPK IHECSICGSE FTSGQALGGH MRRHRTASAA 240 TNSNSTSGGP GGATATHVAV SNSSNDMIGT STKLQRNVLP LDLNLPAPED HDHHHHHHHR 300 ESKFQFVPTQ QTTLVFNAPA LVDCQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-49	C2H2 family protein