PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001038.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 310aa MW: 34323 Da PI: 4.587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	7	36	19	48
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 G g+W+ +ar g+ R++k+c++rw +yl PCP001038.1 7 NGQGCWSDVARNAGLQRCGKSCRLRWINYL 36 58889***********************97 PP
2	Myb_DNA-binding	52.5	1.1e-16	42	85	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ PCP001038.1 42 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 85 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MSYMINNGQG CWSDVARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIHLHSLL 60 GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNLSSSNGS PNASDSSSEP KDHCAMVTGG 120 FISPGQEHGM LPLYMDSTPS FMQSTILNHM FDPLPMLDIN HGGLTFPGAG GYHNANPCIT 180 QREIEVVVGG VGDCYNFGEN GVFGSGDVDI GVEGEIFVPP LESVSTEDQN IKTETIYGDH 240 RNPTSSNNNN YYNNINSILT CNKNIKGESI TGVGNYFDDD QEELTMGDWD LEDLIKDVSS 300 SSFPYLDYQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	4e-51	MYB family protein