PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000999.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 493aa MW: 53278 Da PI: 8.7852

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000999.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.3e-16	99	191	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++ + + + ++ +qCk+k++nl+kryk + ++ + s++ +f++le PCP000999.1 99 EWSDTAIGCLLEAYTEKFNQLNRGNLRGRDWEEVAEMLsercgtggANKSAYKTVEQCKNKIDNLKKRYKVELQRITSS-GLGASHWHWFKKLE 191 5*********************************9999998888777788899***********999998884.788889***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MIDASSHLPA PTRLGDTIDS AAAANNGNFF PPPFPDDIDR SPNPTRNSNT KRSSYYNKRF 60 KSSSANPNPN PTTSTTEAES SSGPETASQR GDYRKDREEW SDTAIGCLLE AYTEKFNQLN 120 RGNLRGRDWE EVAEMLSERC GTGGANKSAY KTVEQCKNKI DNLKKRYKVE LQRITSSGLG 180 ASHWHWFKKL EVILGSSVAA KGGGGSDEER SVGRAGGNVA KQLKRYTPVS AAFGNNLKAK 240 SMPNLKWRRV MLKISGAALA GDCQSIDPKV AMQIAGEVAR ACHLGVEVAI VVGGRNVFCG 300 ETWVSSTGLD RSTAYHIGMM ATVMNSVILQ SALEKVGLQA RVQTSLTIPE VSEPYNRLRA 360 IRHLEKGRVV IFGGTGAGTG NYLFTTDTAA ALRASESRSL PCPLFNAEAV VKGTNLNGIY 420 DSHPGSNSAN VDIICYREVV PSSNTSMDAM ALTYCEENRI PVVIFNLLEP GNISRALCGE 480 QVGTLIDQTG RII

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MIDASSHLPA PTRLGDTIDS AAAANNGNFF PPPFPDDIDR SPNPTRNSNT KRSSYYNKRF  60
KSSSANPNPN PTTSTTEAES SSGPETASQR GDYRKDREEW SDTAIGCLLE AYTEKFNQLN  120
RGNLRGRDWE EVAEMLSERC GTGGANKSAY KTVEQCKNKI DNLKKRYKVE LQRITSSGLG  180
ASHWHWFKKL EVILGSSVAA KGGGGSDEER SVGRAGGNVA KQLKRYTPVS AAFGNNLKAK  240
SMPNLKWRRV MLKISGAALA GDCQSIDPKV AMQIAGEVAR ACHLGVEVAI VVGGRNVFCG  300
ETWVSSTGLD RSTAYHIGMM ATVMNSVILQ SALEKVGLQA RVQTSLTIPE VSEPYNRLRA  360
IRHLEKGRVV IFGGTGAGTG NYLFTTDTAA ALRASESRSL PCPLFNAEAV VKGTNLNGIY  420
DSHPGSNSAN VDIICYREVV PSSNTSMDAM ALTYCEENRI PVVIFNLLEP GNISRALCGE  480
QVGTLIDQTG RII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-161	Trihelix family protein