PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000943.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 373aa MW: 40210.6 Da PI: 6.7571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000943.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	90	109	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r PCP000943.1 90 PCTECGKTFWSWKALFGHMR 109 5******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MNNSPDIDFR FPISPPTHQD AVVPAAPATT IAYAVSSSST CFTAEDKTHH NPRKKRSKLI 60 RLDNQAAPNK VLRPKHAKKP DPSAPKITKP CTECGKTFWS WKALFGHMRC HPERQWRGID 120 PPPNLRLPAS PNITLSELGL AMGEEDHEAA SSLLMLSSGI TSGTSNEIIV TTTATQSVSN 180 TSNLQGIQEV FDGGNSNNSG RFECSSCKKV FASHQALGGH RASHKNVKGC FAITRSDGEV 240 DQDHHHHNEH GDGDGDDDVM DEDHMELVGS SAGHKCSVCW RVFSSGQALG GHMRCHWEKG 300 EETQLELGLG FNLQQPYGTS RELLLGQNSS GGSGGLVLNL PSAAASTSHT ADDQYYSSSY 360 SSSGLTLDLR LGL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MNNSPDIDFR FPISPPTHQD AVVPAAPATT IAYAVSSSST CFTAEDKTHH NPRKKRSKLI  60
RLDNQAAPNK VLRPKHAKKP DPSAPKITKP CTECGKTFWS WKALFGHMRC HPERQWRGID  120
PPPNLRLPAS PNITLSELGL AMGEEDHEAA SSLLMLSSGI TSGTSNEIIV TTTATQSVSN  180
TSNLQGIQEV FDGGNSNNSG RFECSSCKKV FASHQALGGH RASHKNVKGC FAITRSDGEV  240
DQDHHHHNEH GDGDGDDDVM DEDHMELVGS SAGHKCSVCW RVFSSGQALG GHMRCHWEKG  300
EETQLELGLG FNLQQPYGTS RELLLGQNSS GGSGGLVLNL PSAAASTSHT ADDQYYSSSY  360
SSSGLTLDLR LGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	4e-78	C2H2 family protein