PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP000706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | RAV | ||||||||
Protein Properties | Length: 321aa MW: 36832 Da PI: 8.6684 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.9 | 1.1e-12 | 30 | 78 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAak ++ a +k++g PCP000706.1 30 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKTYDIALLKFRG 78 78****9888.8*********3.....5************************997 PP | |||||||
2 | B3 | 96.5 | 1.7e-30 | 161 | 264 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkke....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kv tpsdv++++r+v+pk+ ae+h + +++ l +ede+g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F+++ r+++ PCP000706.1 161 FEKVATPSDVGRLNRMVIPKQQAEKHfqvhQ---SvelcKGVLLNFEDEEGNVWRFRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFQRSVREDK 255 89************************87662...133458899************************************************9988999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l++ + + PCP000706.1 256 KLFIECRPR 264 999987765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence |
MDVMDCLNES TSDSSNNGVK DASSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN 60 EEEEAAKTYD IALLKFRGLD AITNFCQSQI KPYIEDGNEA IFLESHSKAE IVDMLRKHSY 120 VNELEMYKHK LLNAGVRDGG RKRSKCHVDP IDACYERELL FEKVATPSDV GRLNRMVIPK 180 QQAEKHFQVH QSVELCKGVL LNFEDEEGNV WRFRYCYWSS SQSYVLTKGW TRFVKEKKLK 240 AGDVVRFQRS VREDKKLFIE CRPRNVDSLG FREMPAGRVA EPSAAVQDDG VVRLFGVNIM 300 KTCKSCIVDN SRCWRLGASL R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-106 | RAV family protein |