PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP000689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23490.8 Da PI: 8.6276 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28 | 2.8e-09 | 26 | 67 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ + r tf +R++ + K +E+ +LC++ ++ +i+ +++ PCP000689.1 26 ISHEPSRRATFKNRKASFFRKLNEITTLCGVIACAVIYNPSD 67 677778999*********************999988887654 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MQLPEGTCCF FVFSTMAKNR TKRELISHEP SRRATFKNRK ASFFRKLNEI TTLCGVIACA 60 VIYNPSDTKT DVWPSPQEAF YVLEKFRNLS EERRGKFMVD QESFLKNNIS KLNRQLERAR 120 FKNQELDEKL LLIEYLEGKN FLDPGRLESL NGLDQQLDKR IDFITNRIEF LEGLRRNQVD 180 AELDSDGMVV RGIKGGVVGD NQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-27 | M-type_MADS family protein |