PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000635.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 411aa MW: 46250 Da PI: 8.4938

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000635.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.5	2.8e-07	232	254	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H PCP000635.1 232 HYCHVCGKGFKRDANLRMHMRAH 254 68*******************99 PP
2	zf-C2H2	11.1	0.0012	365	380	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L+ Hi PCP000635.1 365 CGTTFSRKDKLMGHIA 380 **************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MISAAPSDCL QPMLQQQHHQ GLQNYEDPHR VSSFLLEPNS PTSLLGPENH STSLFYNLSV 60 LKEKVHQAKS LVNILISPDH HQSQPHESTT IAMSNVIQEI IVTASSMMFT CQKMALGSAT 120 IPGNNINNAT TSTTTGQGLR DHCDHNRLSQ TNFGVADSNK IDQSSFNSTH EQTLDWFSDS 180 FNDCTTRYTS TRIVNHSSHN DRHVQGKELP VSWKNYDIIE LDASDLLAKY THYCHVCGKG 240 FKRDANLRMH MRAHGDEYKT SDALSNPLKK NNNNNDTAGG IDGNTESSTK LPIKYSCPQE 300 GCRWNQKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLR 360 WMCSCGTTFS RKDKLMGHIA LFTGHTPVMI TSLTRSGKVD QQSHGSQMQL G

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MISAAPSDCL QPMLQQQHHQ GLQNYEDPHR VSSFLLEPNS PTSLLGPENH STSLFYNLSV  60
LKEKVHQAKS LVNILISPDH HQSQPHESTT IAMSNVIQEI IVTASSMMFT CQKMALGSAT  120
IPGNNINNAT TSTTTGQGLR DHCDHNRLSQ TNFGVADSNK IDQSSFNSTH EQTLDWFSDS  180
FNDCTTRYTS TRIVNHSSHN DRHVQGKELP VSWKNYDIIE LDASDLLAKY THYCHVCGKG  240
FKRDANLRMH MRAHGDEYKT SDALSNPLKK NNNNNDTAGG IDGNTESSTK LPIKYSCPQE  300
GCRWNQKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLR  360
WMCSCGTTFS RKDKLMGHIA LFTGHTPVMI TSLTRSGKVD QQSHGSQMQL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-109	C2H2 family protein