PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000632.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 322aa MW: 35079 Da PI: 7.3124

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000632.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00075	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H PCP000632.1 124 YECKTCNRTFPSFQALGGHRASH 146 99**********99999998887 PP
2	zf-C2H2	13.1	0.00028	211	233	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PCP000632.1 211 HECSICGSEFTSGQALGGHMRRH 233 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MEGQEELVVT NDQASQMIMI KGRRTKRQRP QSPNGVVTVA VTSSSSSACG AGTIGGGDHD 60 YNYCGNSFTS PTTSGEIYES TEEEEDMANC LILLAQGDHV NPKQTIEERL AQNTNMGKAG 120 FFVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEMIK KSPPAAAPPT HHFITATTFE 180 EFEDQSKQLI KYKSSPPPAI PIQVGNKPKI HECSICGSEF TSGQALGGHM RRHRTASAAT 240 NNNTASGSAT ATHVAVNNSS NNMIGTSTKL QRNVLPLDLN LPAPEDHDHH HHHHHRESKF 300 QFVPTQQATL VFNAPALVDC HY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-53	C2H2 family protein