PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000545.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 337aa    MW: 37930.4 Da    PI: 6.0023
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000545.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++li+w + +nsfvv+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+ ++F +g+++ll+++ 
   PCP000545.1  13 FVMKTYQMVNDPTTDNLITWGRANNSFVVVDPVVFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFASEWFLRGQTHLLRNVA 100
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   PCP000545.1 101 RRKH 104
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MMMEEGNNVI APFVMKTYQM VNDPTTDNLI TWGRANNSFV VVDPVVFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFASEWFLR GQTHLLRNVA RRKHMGKSSS SNSNSNFLQA  120
KHEDLDGEDI IREISGLKQE QKALEQEIGD MNRRLDATER RPQQMMAFLN KVAEDPEILP  180
RMMLEKNRAT AAQLGEKKRR VMMMASTSSW SSTMGATTSV KTEDEDDGTV GVISSSPEAG  240
FEMESFNRYP TPPEAQTVSD WLRQRRVVDR VHAVQNPYNM NTTASGHGAE NTWNSSNSAY  300
GYGNGRGGVP GGEVGFFTEV EASPPPPYPF SLLEGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-85HSF family protein