PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000535.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 304aa    MW: 34260.2 Da    PI: 7.868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000535.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-082770445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+eE +l+ +a +++ ++   +W ++a++++ g+t  +++  + 
      PCP000535.1 27 WTAEENKLFENALALYDKDtpeRWLSVAAMIP-GKTVGDVIKQYK 70
                     ********************************.****99988775 PP
2Myb_DNA-binding47.25e-15133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
      PCP000535.1 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MFRGMEILSP NLQNSNWLFQ ESKGADWTAE ENKLFENALA LYDKDTPERW LSVAAMIPGK  60
TVGDVIKQYK ELEEDINDIE AGLIPIPGYT SNNFTLEWVN NQGFDGLKQF YSVGGKRGAS  120
TRPADQERKK GVPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR  180
QLTGGKDKRR SSIHDITTVN LPDVIPASPD NTKSPPSSAH SSTVVQQPHQ HQKLTGTSID  240
WKSPDEGQHL VGSANGNNNF MGPFCGISTH VPKLEEQSFL SGNLHGSQFG HYNARFEMQS  300
MRYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-120MYB family protein