PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP000510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25328.1 Da PI: 7.6965 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.1e-14 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l d++ +G+g W+++ + g++R++k+c++rw +yl PCP000510.1 9 KGLWTVEEDRILTDYIGVHGKGKWNRVNKVTGLKRSGKSCRLRWMNYL 56 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.8e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +++eEd+l+++++++ G++ W++Ia +++ gRt++q+k++w+++l PCP000510.1 62 RSDFSEEEDDLIIRVHNLVGNR-WSLIAGRVP-GRTDNQVKNHWNSHL 107 6789******************.*********.************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MDGGNDYKKG LWTVEEDRIL TDYIGVHGKG KWNRVNKVTG LKRSGKSCRL RWMNYLSPSV 60 KRSDFSEEED DLIIRVHNLV GNRWSLIAGR VPGRTDNQVK NHWNSHLSKK LGVNSKRGKT 120 KAKTYSDSKR AKNNFCTPSS ESNSELQPLP NSDSNSNISG DHEAAAAIDG FDEEMMNIQD 180 HIGSKSEVGF SGMSEATMMS NDYSFWFHND DLNPYEPLFI GPYSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-65 | MYB family protein |