PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000424.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 458aa    MW: 51308.2 Da    PI: 5.0798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000424.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.12.1e-94664543374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ecA+avs++d +++++lL+ l+elasp+gd  q+la+yf++AL  + ++s+ ++yk+l++ ++++++ +++ +    f+evsP+ +f+h++ N 
  PCP000424.1  66 RLLMECARAVSEKDSSKINHLLWMLNELASPYGDCEQKLAFYFLQALFCKATESGVRCYKTLTSVAEKSHSFDSARKLILKFQEVSPWTTFGHVASNG 163
                  79************************************************************9999985554444444445***************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvk 197
                  aIlea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+  +s  k  ++e+g+r++kfA+ +gvpfe+nv+   ++l +l+ e+L v+
  PCP000424.1 164 AILEALEGETKLHIIDISNTICTQWPTLLEALATRNDETPHLKLTVVVT-ASIVKSVMKEIGQRMEKFARLMGVPFEINVIsGLNNLGELTKEDLGVQ 260
                  *************************************************.66799*************************95567************* PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++Ea+aVn++ +l r+      +e+ r +v+++++sl+P+vv+vve+ead+ +s+   +F++ f e+l++y+  fd+le+++ ++s+er ++Ere  +
  PCP000424.1 261 EDEAVAVNCIGALRRVE-----VEE-RGAVIRMFQSLRPRVVTVVEEEADLfSSSvnhDFVKCFEECLRFYTLYFDMLEESFVPTSNERLMLERE-CS 351
                  ***************97.....444.88********************99965546669************************************.89 PP

         GRAS 292 reivnvvacegaerr........erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.......ee.......sgslvlgWkdrpL 367
                  r+iv v+ c + ++         er+e+ ++W++rl+ a F+pv +s+++++++k+ll+++   g+ +         e       +  ++l+Wk++p+
  PCP000424.1 352 RSIVRVLGCDHHDHDddknggecERRERGSQWSDRLKVA-FSPVGFSDDVVDDVKALLKRYR-AGWALVlpppqggGEgggdhidQTGIYLTWKEEPV 447
                  *********99876433344444899**********866.**********************.777777556555500566666588888******** PP

         GRAS 368 vsvSaWr 374
                  v++S W+
  PCP000424.1 448 VWASIWK 454
                  ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MDISLFSPNK EANFLQQYSN QIKINGLAAA IDMQSTNQQP QNSHTSTSRS WGSSEPCPEG  60
AKWASRLLME CARAVSEKDS SKINHLLWML NELASPYGDC EQKLAFYFLQ ALFCKATESG  120
VRCYKTLTSV AEKSHSFDSA RKLILKFQEV SPWTTFGHVA SNGAILEALE GETKLHIIDI  180
SNTICTQWPT LLEALATRND ETPHLKLTVV VTASIVKSVM KEIGQRMEKF ARLMGVPFEI  240
NVISGLNNLG ELTKEDLGVQ EDEAVAVNCI GALRRVEVEE RGAVIRMFQS LRPRVVTVVE  300
EEADLFSSSV NHDFVKCFEE CLRFYTLYFD MLEESFVPTS NERLMLEREC SRSIVRVLGC  360
DHHDHDDDKN GGECERRERG SQWSDRLKVA FSPVGFSDDV VDDVKALLKR YRAGWALVLP  420
PPQGGGEGGG DHIDQTGIYL TWKEEPVVWA SIWKPSAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-142GRAS family protein