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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP000182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | AP2 | ||||||||
Protein Properties | Length: 406aa MW: 45658.7 Da PI: 8.3973 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.5e-15 | 70 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g PCP000182.1 70 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 129 789******************888855655447*************************98 PP | |||||||
2 | AP2 | 56.3 | 7.7e-18 | 172 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g PCP000182.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 223 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MELMMVKNEE NRGRRRLSAA DREVQAARCV KRRRRDPPAV TVSSDNNQIE LQLPQKPADQ 60 TPATTMKRSS RFRGVSRHRW TGRFEAHLWD KLSWNITQKK KGKQVYLGAY DEEESAARAY 120 DLAALKYWGA STFTNFAISD YEKEIEIMQS VTKEEYLASL RRKSSGFSRG VSKYRGVARH 180 HHNGRWEARI GRVFGNKYLY LGTYGTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK 240 PKAGDTIATQ ELEAVTEPQK MPFMANGYIP ADETSFPHTN PFPSDCLNSP RNQEVTRSST 300 NLNAGSKSSS PTALGLLLQS SIFRELVQKN SNLSEDDSTD DEEPKNQPQA GSDEEYGGIF 360 HAGTGENPFV CSSSTDGDNP WNNIASTILL NQPTKANASD SLFFFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 35 | RRRLSAADREVQAARCVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-94 | AP2 family protein |