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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0005509.1_g030.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 48503.3 Da PI: 7.2833 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23 | 2e-07 | 356 | 395 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfg 37 s+y+GV++++++gr++A+++d ++ g rk ++gk Pav_sc0005509.1_g030.1.mk 356 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQVGKLS 395 78*******************7777666555888888765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MKSMSNDGSS NNNNNNNNSN NNNNNWLDFS LSPNMKMEAP SEPHHHHHHH QISESSSSSV 60 AAIASSVPTS FFHSPPHFNY GIYYGVEGDT SAGLYSPLSM MPLKSDGSLC IMEALNRSQQ 120 PQGMVTTTTT STPKLEDFFG GATMGTHYEN NDREAMALSL DSMFYQQNNH HEPNNQNLIN 180 HLQQQQQQQQ QNPRHQEQSV HQVQVQAQQQ QYSYYSGLRG HEMMLEEGHK ETHLAANNYN 240 LQQPRMGLDQ SISEMKSWIS RNYAANHAME QNMIGCMGDN GAESGSIGAM PYGDLQSLSL 300 SMSPGSQSSC VTGSQQISPT VADGVTMDTK KRGPEKVDQK QIVHRKSLDT FGQRTSQYRG 360 VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ VGKLSKRTGG HEEHDQTRIC CPLKEEKQWI 420 LKRGFNVQRS D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 6e-30 | AP2 family protein |