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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0004305.1_g170.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 465aa MW: 50965.8 Da PI: 6.8633 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.8 | 1.2e-07 | 322 | 355 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 s y+GV+++++ grW A+I + +k +lg+f Pav_sc0004305.1_g170.1.mk 322 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFT 355 78****************988532...5*******96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MSNWLGFSLT PHLRIHEGFG GGEDQQDHGG GGGFTSQMTI MPLRSDGSLC VPADPFRRPN 60 GSEDWRYENH MGATSVTDPN DERGPKLEDF LGSCYSSSPT PSETKVYNCQ STQQDQNPET 120 ISQINVNEAP NFNTTTNNRE DNNNNNLIQP YSHYCTLNPP SLIPSNGMYK SWLGQTVPFS 180 DEKSSPCGDH HQANGNSFHQ SSLSLTMSPS LQQNGNNMGA ISQLQIVESK KRPVGKSAAR 240 EPVPRKSIDT FGQRTSQFRG IGGLGDMRPI CGIIVAEKKG KQGKEGKLST YEKELEEMKN 300 MTRQEFVANL RRKSSGFSRG ASVYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFTSGEPC 360 DDMAEMVWNN NNAEDHSHSH NENSNTTTNN AALGASSSRN SSSPQSPKCS FGHTSEFGLG 420 GDYSHAYFSM QGAKYEDGNG GGNDHSRLGN LGLVPQVPMF ALWND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-50 | AP2 family protein |