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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001872.1_g060.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 351aa MW: 39158 Da PI: 8.9499 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.2 | 8.4e-13 | 48 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g Pav_sc0001872.1_g060.1.mk 48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 104 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 51.3 | 3e-16 | 147 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pav_sc0001872.1_g060.1.mk 147 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 198 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence |
MAKTSQQNQK NTASSNNSST NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG 60 RYEAHLWDKN CWNESQNKKG RQGAYDDEEA AARAYDLAAL KYWGQDTILN FPLGTYPEEL 120 KEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA 180 TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKSLCPNNQN VPNNAQPNPN GDLSPTQNPN 240 SKLGLGFIPN YHSSSSSASD STIALPQPGN GASASSALGL LLQSPKFKEM LERTSASSTL 300 SEPNIPRRSF PDDIQTYFDC QDLNSYAEGD DIIFGDLQSF ASPVFHCELD A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-98 | AP2 family protein |