PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001102.1_g220.1.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 864aa    MW: 96362.4 Da    PI: 6.9324
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001102.1_g220.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18123173255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  Pav_sc0001102.1_g220.1.mk 123 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAYRMRG 173
                                7********.***********9987..*************************98 PP

2AP263.54.5e-20391441255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka++ a+ kl+g
  Pav_sc0001102.1_g220.1.mk 391 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDLAAFKLRG 441
                                7********.**********9...4334*************************98 PP

3AP263.54.5e-20695745255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka++ a+ kl+g
  Pav_sc0001102.1_g220.1.mk 695 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDLAAFKLRG 745
                                7********.**********9...4334*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    
MSDNNQSLIP CLTEQWGDLP FKVDDSEDMI VYSSLNDALS FGWLPDHSLY EYVKPEPLLY  60
DPFDHHHALP NFFTQFQQYQ DVNNAPITLP FEHDHHDDQK QAQVVDAADQ NKAPKSGVAR  120
GRHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTYETSEEA ALAYDRAAYR MRGSKALLNF  180
PHRIGLNEPP PVRVTGKRKE PEAETAAAAS TTPPKSAKRT KASSVAEHDH HQANVFRTRQ  240
NSSMGLLPLG EQLLMATEHE ETSALDLIRQ HLLNEFTSMD SFISSLHLCT SQIPQPQISH  300
LPSQSKTNST TSSDQYFRIS DFLLPEIDQD TQFETKPQIA HPKPPKHSTL SHRKPSINVA  360
IPSPPVLSGD EPQNPSSSNN LVVEASATAR HYRGVRRRPW GKYAAEIRDP NRRGSRVWLG  420
TFDTAIEAAK AYDLAAFKLR GSKAILNFPL EAGKTAETEQ PLQTTVGGSR KRRRESGEQS  480
TDSQERQSSE EISNKEMKKE NQEMVCSSSS NSGVCPLTPS SWTAVWDISK ENEQGIFSVP  540
PLSPLSPHTS FLGFPQLMMA TEHEETSALD LIRQHLLNEF TSMDSFISSL HLCTSQIPQP  600
QISHLPSQSK TNSTTSSDQY FRISDFLLPE IDQDTQFETK PQIAHPKPPK HSTLSHRKPS  660
INVAIPSPPV LSGDEPQNPS SSNNLVVEAS ATARHYRGVR RRPWGKYAAE IRDPNRRGSR  720
VWLGTFDTAI EAAKAYDLAA FKLRGSKAIL NFPLEAGKTA ETEQPLQTTV GGSRKRRRES  780
GEQSTDSQER QSSEEISNKE MKKENQEMVC SSSSNSGVCP LTPSSWTAVW DISKENEQGI  840
FSVPPLSPLS PHTSFLGFPQ LMVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470474RKRRR
2774778RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-51ERF family protein