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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001102.1_g220.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 864aa MW: 96362.4 Da PI: 6.9324 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 123 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t eeAa a+++a+ +++g Pav_sc0001102.1_g220.1.mk 123 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAYRMRG 173 7********.***********9987..*************************98 PP | |||||||
2 | AP2 | 63.5 | 4.5e-20 | 391 | 441 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka++ a+ kl+g Pav_sc0001102.1_g220.1.mk 391 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDLAAFKLRG 441 7********.**********9...4334*************************98 PP | |||||||
3 | AP2 | 63.5 | 4.5e-20 | 695 | 745 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka++ a+ kl+g Pav_sc0001102.1_g220.1.mk 695 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDLAAFKLRG 745 7********.**********9...4334*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence |
MSDNNQSLIP CLTEQWGDLP FKVDDSEDMI VYSSLNDALS FGWLPDHSLY EYVKPEPLLY 60 DPFDHHHALP NFFTQFQQYQ DVNNAPITLP FEHDHHDDQK QAQVVDAADQ NKAPKSGVAR 120 GRHYRGVRQR PWGKFAAEIR DPAKNGARVW LGTYETSEEA ALAYDRAAYR MRGSKALLNF 180 PHRIGLNEPP PVRVTGKRKE PEAETAAAAS TTPPKSAKRT KASSVAEHDH HQANVFRTRQ 240 NSSMGLLPLG EQLLMATEHE ETSALDLIRQ HLLNEFTSMD SFISSLHLCT SQIPQPQISH 300 LPSQSKTNST TSSDQYFRIS DFLLPEIDQD TQFETKPQIA HPKPPKHSTL SHRKPSINVA 360 IPSPPVLSGD EPQNPSSSNN LVVEASATAR HYRGVRRRPW GKYAAEIRDP NRRGSRVWLG 420 TFDTAIEAAK AYDLAAFKLR GSKAILNFPL EAGKTAETEQ PLQTTVGGSR KRRRESGEQS 480 TDSQERQSSE EISNKEMKKE NQEMVCSSSS NSGVCPLTPS SWTAVWDISK ENEQGIFSVP 540 PLSPLSPHTS FLGFPQLMMA TEHEETSALD LIRQHLLNEF TSMDSFISSL HLCTSQIPQP 600 QISHLPSQSK TNSTTSSDQY FRISDFLLPE IDQDTQFETK PQIAHPKPPK HSTLSHRKPS 660 INVAIPSPPV LSGDEPQNPS SSNNLVVEAS ATARHYRGVR RRPWGKYAAE IRDPNRRGSR 720 VWLGTFDTAI EAAKAYDLAA FKLRGSKAIL NFPLEAGKTA ETEQPLQTTV GGSRKRRRES 780 GEQSTDSQER QSSEEISNKE MKKENQEMVC SSSSNSGVCP LTPSSWTAVW DISKENEQGI 840 FSVPPLSPLS PHTSFLGFPQ LMVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 470 | 474 | RKRRR |
2 | 774 | 778 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-51 | ERF family protein |