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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000358.1_g640.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26113.6 Da PI: 9.6875 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Pav_sc0000358.1_g640.1.mk 9 KRIENKINRQVTFSKRRAGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 106.6 | 3e-35 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 ++ +++++ + s++ e+akLk+++e Lqr++ h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+l Pav_sc0000358.1_g640.1.mk 78 KQLLANDHESTGSWTLEHAKLKARVEVLQRNHSHFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKAL 161 555566778899************************************************************************ PP K-box 88 qeenkaLrkklee 100 qe+n+ L kk++e Pav_sc0000358.1_g640.1.mk 162 QEQNNLLAKKVKE 174 **********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMERILERY ERYSYSEKQL LANDHESTGS WTLEHAKLKA RVEVLQRNHS HFMGEDLQSL 120 SLKELQNLEQ QLDSALKHIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK KVKEKEKALA 180 PQAHSGSNYQ GIRSDGSGGD HEDVNETPTA NRPNTLLPPW MLRHLNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 3e-98 | MIKC_MADS family protein |