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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000299.1_g080.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 268aa MW: 30875.9 Da PI: 10.4794 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28 | 5.4e-09 | 194 | 227 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 s+y+GV +++ +grW+A+I + g +k+ +lg++ Pav_sc0000299.1_g080.1.mk 194 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYR 227 89****99**********99966...3.6*******95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MKQNFEWTAW GLKWDAPKSS SPLFSDIILL WQHKTKQLKA KTSTHEMELM MVKNEENTRR 60 RRLSTVDREA QESRCVKRRR RDPAAVAVSC DNSQSEQHLP QKPADQTSAT TTKRSSRFRG 120 VSRFESETNF SGIDGLVDLK PTCGISSLGM QRRRRKGNKI SDYEEEIDIM QTVTKEEYLA 180 SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYRPET VAKPQYILPF 240 MANSNIPTEE PSFSHTNPFA SGALLYEH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 81 | RRRRLSTVDREAQESRCVKRRRR |
2 | 60 | 82 | RRRRLSTVDREAQESRCVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 2e-34 | ERF family protein |