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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000257.1_g1310.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 145aa MW: 16816.5 Da PI: 9.4185 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.4e-25 | 19 | 62 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA+ELSvLC+ evaviifs tgkl++yss Pav_sc0000257.1_g1310.1.br 19 ARQVTFSKRRRGIFKKAKELSVLCESEVAVIIFSATGKLFDYSS 62 69****************************************96 PP | |||||||
2 | K-box | 29.7 | 2.7e-11 | 87 | 139 | 15 | 64 |
K-box 15 eslqqela...kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkk 64 +lq e++ +L ke+e r++R+++GedLe+L++ eL++Leq ++ sl + Pav_sc0000257.1_g1310.1.br 87 VELQLEIEnhiRLTKELEAKSRQLRQMKGEDLEELNFDELHKLEQLVDASLGR 139 444444441116777888778****************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence |
MVKMMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAKELSV LCESEVAVII FSATGKLFDY 60 SSSSTKDVVE RYKAHTNSVE KSDELSVELQ LEIENHIRLT KELEAKSRQL RQMKGEDLEE 120 LNFDELHKLE QLVDASLGRA IETEV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 2e-46 | MIKC_MADS family protein |