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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000257.1_g1300.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24537.9 Da PI: 4.892 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.9 | 8.6e-26 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr gi+KKA ELSvLC+ evaviifs tgkl++yss Pav_sc0000257.1_g1300.1.mk 11 KKIDNLPARQVTFSKRRRGIFKKAAELSVLCESEVAVIIFSATGKLFDYSS 61 689999*******************************************96 PP | |||||||
2 | K-box | 44.8 | 5.4e-16 | 86 | 160 | 12 | 86 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 + + ++++ +L ke+ + r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i l +k+ + Pav_sc0000257.1_g1300.1.mk 86 VELQPENENHIRLSKELGEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDELIMSEIMALERKMLS 160 456667788889999999999************************************************999765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI FKKAAELSVL CESEVAVIIF SATGKLFDYS 60 SSSTKDVIER YKAHINGAEK SDEPSVELQP ENENHIRLSK ELGEKSRQLR QMKGEDLEEL 120 NFDELQKLEQ LVDASLGRVI ETKDELIMSE IMALERKMLS RRNIGPALME PERLNNNIGG 180 GGEEEGMSSE SATSTTCNSA PCPSLEDDSD DVTLSLKLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-54 | MIKC_MADS family protein |