![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000176.1_g050.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 24514.1 Da PI: 9.382 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+++fs++gkl+ey++ Pav_sc0000176.1_g050.1.mk 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALVVFSNKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 97.5 | 2e-32 | 86 | 171 | 12 | 97 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + + +++ e+++Lk+++e Lqr+qRh+lGedL+sL+lke+q+Le+qLe++lk+iR +Kn+l++e+i+elq+ke+++qe+n+ L Pav_sc0000176.1_g050.1.mk 86 ESQCNWTFEYSRLKAKVELLQRNQRHYLGEDLDSLTLKEIQSLEHQLETALKQIRLRKNQLMHESISELQRKERAMQEQNNLLA 169 55679*****************************************************************************99 PP K-box 96 kk 97 kk Pav_sc0000176.1_g050.1.mk 170 KK 171 87 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALVVFSN KGKLFEYATD 60 SCMDQILDRY ERYSYAERQL VEPNFESQCN WTFEYSRLKA KVELLQRNQR HYLGEDLDSL 120 TLKEIQSLEH QLETALKQIR LRKNQLMHES ISELQRKERA MQEQNNLLAK KKSINLGTQQ 180 DEFLQVRRNQ LDLTLEPLYS CNLGCFAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-106 | MIKC_MADS family protein |