![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000107.1_g160.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25215.9 Da PI: 10.0293 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.8 | 8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Pav_sc0000107.1_g160.1.mk 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 71.1 | 3.5e-24 | 89 | 173 | 14 | 98 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +e+ + + + k+i+ ++ ++ +llG++Les+s++eL+q e+qLe++l+kiR++K++ll+eqie+l++ ek+l e+n +Lr+k Pav_sc0000107.1_g160.1.mk 89 MERGKDDTCSMAKKIDFIEASKQKLLGNCLESCSIEELHQTENQLERGLSKIRARKTQLLREQIEKLKEEEKNLFEQNAKLREK 172 566667777899**********************************************************************98 PP K-box 98 l 98 Pav_sc0000107.1_g160.1.mk 173 C 173 5 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence |
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFASS 60 SFSISNTLDR YQRRVKDQGL GSKAVQVDME RGKDDTCSMA KKIDFIEASK QKLLGNCLES 120 CSIEELHQTE NQLERGLSKI RARKTQLLRE QIEKLKEEEK NLFEQNAKLR EKCGMQPLGP 180 PSKRKDGENL AVRQPRTPDM EDVETDLVIG PPERRRSGQN P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-65 | MIKC_MADS family protein |