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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000072.1_g690.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25442.9 Da PI: 9.6942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.2 | 1.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s Pav_sc0000072.1_g690.1.mk 10 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 74.8 | 2.3e-25 | 78 | 178 | 5 | 97 |
K-box 5 sgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK......nellleqieel 80 ++++ +++++++l+qe++ + k+ie L+ ++R+llGe+L+s++++eLq+LeqqLe+s++++R++K +++++eqie+l Pav_sc0000072.1_g690.1.mk 78 TNNKsvSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGSCTIEELQELEQQLERSVSNVRARKvdlkpnTQVFKEQIEQL 161 344446899*********************************************************9777777799******** PP K-box 81 qkkekelqeenkaLrkk 97 ++kek+l en++L +k Pav_sc0000072.1_g690.1.mk 162 REKEKALAAENERLIEK 178 **************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 SMQTTIERYQ KHTKDNHTNN KSVSTDQNMQ HLKQESSSMM KQIELLEVSK RKLLGEGLGS 120 CTIEELQELE QQLERSVSNV RARKVDLKPN TQVFKEQIEQ LREKEKALAA ENERLIEKCG 180 SIQPRQAPNE QRENLAYTES SPSSDVETEL FIGLPERRVK R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-87 | MIKC_MADS family protein |