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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000044.1_g960.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27135.8 Da PI: 9.9055 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 9.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s Pav_sc0000044.1_g960.1.mk 9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDARVSLIMLSNTGKMHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 79.1 | 1.1e-26 | 71 | 163 | 1 | 93 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 yqk+ g++l++++++ ++ l kLk+ +++L+re+R++lG dL+ L++ +L++Le+++ +sl+ iR++K++++++q+e+++kk Pav_sc0000044.1_g960.1.mk 71 YQKTMGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTHAQLRSLEDKMASSLEVIRERKYHVIKTQTETSKKKV 154 7999999***************************************************************************** PP K-box 85 kelqeenka 93 k+l+e+ + Pav_sc0000044.1_g960.1.mk 155 KNLEERRGN 163 ****98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD ARVSLIMLSN TGKMHEYISP 60 TTTTKRMYDD YQKTMGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTHAQ 120 LRSLEDKMAS SLEVIRERKY HVIKTQTETS KKKVKNLEER RGNMLHGYEL ASEDPQYGYV 180 VNEGEYESAV ALANGASNLF TIHLHQDIRD HSNLHHHGGS SLGSSITHLH DLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-73 | MIKC_MADS family protein |