PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G03540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Trihelix

Protein Properties

Length: 432aa MW: 48856.2 Da PI: 6.6303

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G03540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	8.7e-26	108	203	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 +Wt+++v++Li+a+++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d ONIVA12G03540.1 108 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 201 7*******************9877778889999********************************************5499999999988 PP trihelix 84 ql 85 + ONIVA12G03540.1 202 CM 203 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM YVNQSTDSDH LSEFQFGELG 60 KVDHHHHHHH RQHAKNSMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA 120 VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR 180 LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP 240 EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM 300 HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLAKQSAD 360 LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE 420 LELKQKGSGN HA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM YVNQSTDSDH LSEFQFGELG  60
KVDHHHHHHH RQHAKNSMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA  120
VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM  300
HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLAKQSAD  360
LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE  420
LELKQKGSGN HA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-101	Trihelix family protein

Link Out ? help Back to Top
Ensembl	ONIVA12G03540.1