PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G01620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 100aa MW: 10736.3 Da PI: 9.7244 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.9e-21 | 13 | 60 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+nk +rqvtf+kRr g++KKA+EL L +a +av++fs+t+ y + ONIVA12G01620.1 13 HIDNKERRQVTFTKRRGGLFKKASELALLAGASIAVVVFSETNLAYAF 60 69****************************************998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MRPLGRTSKG RQHIDNKERR QVTFTKRRGG LFKKASELAL LAGASIAVVV FSETNLAYAF 60 GDPSVDAVLL SYGPVPGEDA EPAPVHSGGL GKDVDLEMLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-19 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA12G01620.1 |