PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA11G16660.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 409aa MW: 43914.9 Da PI: 8.8111

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G16660.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.9	7.2e-23	159	202	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e ONIVA11G16660.3 159 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 202 59***************************************996 PP
2	QLQ	58.1	2.6e-20	106	142	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++ ONIVA11G16660.3 106 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 142 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MLSSCGGHGH GNPRSLQEEH HGRCGEQQGG GGGGGQEQEQ DGFLVREARA SPPSPSSSSF 60 LGSTSSSCSG GGGGGQMLSF SSPNGTAGLG LSSGGSMQGV LARVRGPFTP TQWMELEHQA 120 LIYKHIAANV SVPSSLLLPI RRSLHPWGWG SFPPGCADVE PRRCRRTDGK KWRCSRDAVG 180 DQKYCERHIN RGRHRSRKHV EGRKATLTIA EPSMVIAAGV SSRGHTVARQ KQVKGSAATI 240 SDPFSRQSNR KFLEKQNVVD QLSPMDSFDF SSTQSSPNYD NVALSPLKLH HDHDESYIGH 300 GAGSSSEKGS MMHESRLTVS KETLDDGPLG EVFKRKNCQS ASTEILTEKW TENPNLHCPS 360 GILQMATKFN SISSGNTVNS GGTAVENLIT DNGYLTARMM NPHIVPTLL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MLSSCGGHGH GNPRSLQEEH HGRCGEQQGG GGGGGQEQEQ DGFLVREARA SPPSPSSSSF  60
LGSTSSSCSG GGGGGQMLSF SSPNGTAGLG LSSGGSMQGV LARVRGPFTP TQWMELEHQA  120
LIYKHIAANV SVPSSLLLPI RRSLHPWGWG SFPPGCADVE PRRCRRTDGK KWRCSRDAVG  180
DQKYCERHIN RGRHRSRKHV EGRKATLTIA EPSMVIAAGV SSRGHTVARQ KQVKGSAATI  240
SDPFSRQSNR KFLEKQNVVD QLSPMDSFDF SSTQSSPNYD NVALSPLKLH HDHDESYIGH  300
GAGSSSEKGS MMHESRLTVS KETLDDGPLG EVFKRKNCQS ASTEILTEKW TENPNLHCPS  360
GILQMATKFN SISSGNTVNS GGTAVENLIT DNGYLTARMM NPHIVPTLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-37	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA11G16660.3